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publications
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
Published in Nature Communications, 2020
Recommended citation: Sadegh, S., Matschinske, J., Blumenthal, D.B. et al. Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing. Nat Commun 11, 3518 (2020). https://doi.org/10.1038/s41467-020-17189-2 https://www.nature.com/articles/s41467-020-17189-2
Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies
Published in Nature Computational Science, 2021
Recommended citation: Späth, J. et al. Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies. Nat Comput Sci 1, 33–41 (2021). https://doi.org/10.1038/s43588-020-00007-6 https://www.nature.com/articles/s43588-020-00007-6
Flimma: a federated and privacy-aware tool for differential gene expression analysis
Published in Genome Biology, 2021
Recommended citation: Zolotareva, O., Nasirigerdeh, R., Matschinske, J. et al. Flimma: a federated and privacy-aware tool for differential gene expression analysis. Genome Biol 22, 338 (2021). https://doi.org/10.1186/s13059-021-02553-2 https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02553-2
Privacy-aware multi-institutional time-to-event studies
Published in Plos Digital Health, 2022
Recommended citation: Späth J, Matschinske J, Kamanu FK, Murphy SA, Zolotareva O, et al. (2022) Privacy-aware multi-institutional time-to-event studies. PLOS Digital Health 1(9): e0000101. https://doi.org/10.1371/journal.pdig.0000101 https://journals.plos.org/digitalhealth/article?id=10.1371/journal.pdig.0000101
Privacy-Preserving Artificial Intelligence Techniques in Biomedicine
Published in Methods of Information in Medicine, 2022
Recommended citation: Torkzadehmahani R, Nasirigerdeh R, Blumenthal DB, Kacprowski T, List M, Matschinske J, Spaeth J, Wenke NK, Baumbach J. Privacy-Preserving Artificial Intelligence Techniques in Biomedicine. Methods Inf Med. 2022 Jan 21. doi: 10.1055/s-0041-1740630. PMID: 35062032. https://www.thieme-connect.com/products/ejournals/html/10.1055/s-0041-1740630
sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies
Published in Genome Biology, 2022
Recommended citation: Nasirigerdeh, R., Torkzadehmahani, R., Matschinske, J. et al. sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies. Genome Biol 23, 32 (2022). https://doi.org/10.1186/s13059-021-02562-1 https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02562-1
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
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This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Advanced Bioinformatics
Bachelor course, Technical University of Munich, 2021